MetaNetX
Automated Model Construction and Genome Annotation for Large-Scale Metabolic Networks
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Summary
Pick from repository
Import model
Upload reactions
Delete models
Upload genome
Revived!
Analyze
Flux balance (FBA)
Groups of coupled reactions (GCR)
Blocked reactions (BLO)
Reaction knockout (RKO)
Gene/peptide knockout (PKO)
Align mnet
new
Create / Modify
Combine logically
Split and merge
Growth recovery (GRE)
Build from a genome (BUILD)
Revived!
Inspect chem
new
Utilities
Search/Download MNXref namespace
MNXref ID mapper
SPARQL query
Reset session
Documents
Getting started
A short tutorial
Model internals
About
help [AT] metanetx.org
Info / How to cite
**This is a beta version of MetaNetX/MNXref, MNXref identifiers may not be final**
ID mapper
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Available identifier prefixes:
Data source
prefix
Chemicals
MetaNetX
no prefix
InChIKey
no prefix
BiGG
biggM:
ChEBI
chebi:
enviPath
envipathM:
HMDB
hmdb:
KEGG compound
keggC:
KEGG drug
keggD:
KEGG glycan
keggG:
LipidMaps
lipidmapsM:
MetaCyc
metacycM:
Reactome
reactomeM:
SABIO-RK
sabiorkM:
SwissLipids
slm:
The SEED
seedM:
VMH
vmhM:
Reactions
MetaNetX
no prefix
BiGG>
biggR:
KEGG
keggR:
MetaCyc
metacycR:
Rhea
rh:
SABIO-RK
sabiorkR:
The SEED
seedR:
VMH
vmhR:
Compartments
MetaNetX
no prefix
BiGG
biggC:
Cell Ontology
cl:
Gene Ontology
go:
The SEED
seedC:
Chemical examples
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Reaction examples
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Compartment examples
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